Variant report

Variant	rs7611085
Chromosome Location	chr3:116024083-116024084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11918762	0.83[CHD][hapmap]
rs12494652	1.00[CHB][hapmap]
rs1461128	0.90[EUR][1000 genomes]
rs1461129	0.90[EUR][1000 genomes]
rs16824799	1.00[CHD][hapmap]
rs1712999	0.83[CHD][hapmap]
rs17704285	0.83[CHD][hapmap]
rs1993733	1.00[CHB][hapmap]
rs2100807	1.00[CHB][hapmap]
rs60713174	0.90[EUR][1000 genomes]
rs6438312	0.83[CHD][hapmap]
rs6809953	0.83[CHD][hapmap]
rs957783	0.83[CHD][hapmap]
rs9809878	1.00[CHB][hapmap]
rs9811136	1.00[CHD][hapmap]
rs9877364	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116017000-116029600	Enhancers	Colon Smooth Muscle	Colon
2	chr3:116019200-116025600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:116019200-116028400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:116019400-116025000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:116019400-116025000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:116019400-116025000	Weak transcription	Brain Substantia Nigra	brain
7	chr3:116019600-116037000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:116022200-116033000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:116023800-116025000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:116023800-116026000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:116024000-116024800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:116024000-116028600	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links