Variant report

Variant	rs16824799
Chromosome Location	chr3:116068599-116068600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116068430..116070631-chr3:116074599..116076825,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11918762	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs13073491	1.00[CHB][hapmap]
rs13320911	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13321959	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1712999	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17646052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17652825	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17702596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17704285	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1835672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4831093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6438312	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs6775293	1.00[CHB][hapmap]
rs6809953	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs72950135	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7611085	1.00[CHD][hapmap]
rs9289052	0.81[AFR][1000 genomes]
rs957783	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs9811136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817789	0.81[AFR][1000 genomes]
rs9822049	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9836288	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9837791	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs9869252	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9877364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116058800-116069000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:116061800-116069000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116063600-116070400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:116064000-116069000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:116064000-116069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:116067800-116069800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:116067800-116069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:116068000-116069600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:116068000-116069800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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