Variant report

Variant	rs9822049
Chromosome Location	chr3:116066194-116066195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13320911	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13321959	1.00[EUR][1000 genomes]
rs16824799	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17646052	0.92[ASN][1000 genomes]
rs17652825	1.00[EUR][1000 genomes]
rs17702596	0.88[ASN][1000 genomes]
rs17704285	1.00[EUR][1000 genomes]
rs1835672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831093	0.96[ASN][1000 genomes]
rs72950135	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289052	0.82[AFR][1000 genomes]
rs9811136	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817789	0.82[AFR][1000 genomes]
rs9836288	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9837791	0.92[AFR][1000 genomes]
rs9869252	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877364	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116058800-116069000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:116061800-116069000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116062000-116066800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:116062000-116067000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:116062200-116066800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:116062400-116066800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:116063600-116070400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:116063800-116066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:116063800-116066800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:116064000-116066200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:116064000-116066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:116064000-116069000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:116064000-116069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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