Variant report

Variant	rs1835672
Chromosome Location	chr3:116052223-116052224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13320911	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13321959	1.00[EUR][1000 genomes]
rs16824799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17646052	0.92[ASN][1000 genomes]
rs17652825	1.00[EUR][1000 genomes]
rs17702596	0.88[ASN][1000 genomes]
rs17704285	1.00[EUR][1000 genomes]
rs4831093	0.96[ASN][1000 genomes]
rs72950135	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289052	0.81[AFR][1000 genomes]
rs9811136	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817789	0.81[AFR][1000 genomes]
rs9822049	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836288	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9837791	0.95[AFR][1000 genomes]
rs9869252	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877364	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116046200-116058000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:116052200-116060600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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