Variant report

Variant	rs9877364
Chromosome Location	chr3:116121972-116121973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11918762	1.00[CHD][hapmap]
rs13320911	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824799	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1712999	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17646052	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17652825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17702596	1.00[JPT][hapmap]
rs17704285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835672	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4831093	1.00[JPT][hapmap]
rs6438312	1.00[CHD][hapmap]
rs6809953	1.00[CHD][hapmap]
rs72950135	0.96[EUR][1000 genomes]
rs7611085	0.83[CHD][hapmap]
rs9289052	0.88[AFR][1000 genomes]
rs957783	1.00[CHD][hapmap]
rs9811136	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs9817789	0.88[AFR][1000 genomes]
rs9822049	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836288	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837791	0.80[YRI][hapmap]
rs9869252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116117600-116124000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:116118800-116123800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:116119000-116123800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:116119200-116123800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:116120400-116126000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:116121600-116122000	Enhancers	Colon Smooth Muscle	Colon

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