Variant report

Variant	rs9289052
Chromosome Location	chr3:116134008-116134009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10048999	0.83[AMR][1000 genomes]
rs13320911	0.91[AFR][1000 genomes]
rs13321959	0.88[AFR][1000 genomes]
rs16824799	0.81[AFR][1000 genomes]
rs1835672	0.81[AFR][1000 genomes]
rs9817789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822049	0.82[AFR][1000 genomes]
rs9836288	0.91[AFR][1000 genomes]
rs9837791	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869252	0.92[AFR][1000 genomes]
rs9877364	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116132400-116134800	Enhancers	Brain Substantia Nigra	brain
3	chr3:116132400-116135800	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:116132400-116136400	Enhancers	Brain Anterior Caudate	brain
5	chr3:116132400-116141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:116133200-116135000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:116133400-116134400	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:116133400-116136200	Enhancers	Brain Angular Gyrus	brain
9	chr3:116133400-116136200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:116133600-116135000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:116133600-116136200	Enhancers	Fetal Stomach	stomach
12	chr3:116133600-116136400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:116134000-116135000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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