Variant report

Variant	rs9837791
Chromosome Location	chr3:116069103-116069104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10048999	0.83[AMR][1000 genomes]
rs13320911	0.81[AFR][1000 genomes]
rs13321959	0.80[YRI][hapmap]
rs16824799	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs1835672	0.95[AFR][1000 genomes]
rs9289052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9817789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822049	0.92[AFR][1000 genomes]
rs9836288	0.81[AFR][1000 genomes]
rs9877364	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116063600-116070400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:116064000-116069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:116067800-116069800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:116067800-116069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:116068000-116069600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:116068000-116069800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:116069000-116069400	Enhancers	Brain Anterior Caudate	brain
8	chr3:116069000-116069600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:116069000-116069800	Enhancers	Brain Angular Gyrus	brain
10	chr3:116069000-116070400	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:116069000-116071000	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links