Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11918762	1.00[CHB][hapmap]
rs13073491	1.00[CHB][hapmap]
rs13321959	1.00[JPT][hapmap]
rs16824799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1712999	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17646052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17702596	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17704285	1.00[JPT][hapmap]
rs1835672	0.96[ASN][1000 genomes]
rs1993733	0.82[CHB][hapmap]
rs6438312	1.00[CHB][hapmap]
rs6775293	1.00[CHB][hapmap]
rs6809953	1.00[CHB][hapmap]
rs72950135	1.00[ASN][1000 genomes]
rs957783	1.00[CHB][hapmap]
rs9809878	0.82[CHB][hapmap]
rs9811136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9822049	0.96[ASN][1000 genomes]
rs9869252	1.00[JPT][hapmap]
rs9877364	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116032400-116038200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:116032600-116040000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116034200-116038000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:116034400-116038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:116036200-116041400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:116037200-116038000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:116037200-116038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:116037200-116038400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:116037200-116038400	Enhancers	Brain Angular Gyrus	brain
10	chr3:116037200-116038600	Enhancers	Brain Hippocampus Middle	brain
11	chr3:116037400-116038000	Enhancers	Brain Germinal Matrix	brain
12	chr3:116037600-116039000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:116037800-116038600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:116037800-116038600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: