Variant report

Variant	rs7625007
Chromosome Location	chr3:101329236-101329237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13317356	1.00[AMR][1000 genomes]
rs13317716	1.00[AMR][1000 genomes]
rs13433837	1.00[AMR][1000 genomes]
rs16843985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812605	1.00[AMR][1000 genomes]
rs6776266	1.00[AMR][1000 genomes]
rs6790519	1.00[AMR][1000 genomes]
rs6792530	1.00[AMR][1000 genomes]
rs6795215	1.00[AMR][1000 genomes]
rs6798263	1.00[AMR][1000 genomes]
rs7610644	1.00[AMR][1000 genomes]
rs7611807	1.00[AMR][1000 genomes]
rs7611997	1.00[AMR][1000 genomes]
rs7614614	1.00[AMR][1000 genomes]
rs7619403	1.00[AMR][1000 genomes]
rs7624043	1.00[AMR][1000 genomes]
rs7624112	1.00[AMR][1000 genomes]
rs7631731	1.00[AMR][1000 genomes]
rs7642697	1.00[AMR][1000 genomes]
rs7647699	1.00[AMR][1000 genomes]
rs7648014	1.00[AMR][1000 genomes]
rs7648758	1.00[AMR][1000 genomes]
rs9290460	1.00[AMR][1000 genomes]
rs9841608	1.00[AMR][1000 genomes]
rs9872125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101311000-101329800	Weak transcription	Thymus	Thymus
2	chr3:101311400-101329600	Weak transcription	K562	blood
3	chr3:101316400-101331800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:101318600-101331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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