Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:101353618..101355118-chr3:101363975..101366974,2	MCF-7	breast:
2	chr3:101343899..101346704-chr3:101352292..101354517,2	K562	blood:
3	chr3:101291285..101293708-chr3:101352977..101355933,2	MCF-7	breast:
4	chr3:101330944..101333451-chr3:101352917..101354894,2	K562	blood:
5	chr3:101290462..101294650-chr3:101353869..101359325,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction
ENSG00000201511	Chromatin interaction

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13317356	1.00[AMR][1000 genomes]
rs13317716	1.00[AMR][1000 genomes]
rs13433837	1.00[AMR][1000 genomes]
rs16843985	1.00[AMR][1000 genomes]
rs16844031	1.00[AMR][1000 genomes]
rs28812605	1.00[AMR][1000 genomes]
rs58060577	1.00[EUR][1000 genomes]
rs58189156	1.00[EUR][1000 genomes]
rs58823770	1.00[EUR][1000 genomes]
rs59790563	1.00[EUR][1000 genomes]
rs60574960	1.00[EUR][1000 genomes]
rs61050107	1.00[EUR][1000 genomes]
rs6776266	1.00[AMR][1000 genomes]
rs6790519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6792530	1.00[AMR][1000 genomes]
rs6798263	1.00[AMR][1000 genomes]
rs72948055	1.00[EUR][1000 genomes]
rs72948070	1.00[EUR][1000 genomes]
rs73863128	1.00[EUR][1000 genomes]
rs73863338	1.00[EUR][1000 genomes]
rs73863341	1.00[EUR][1000 genomes]
rs73863355	1.00[EUR][1000 genomes]
rs73863358	1.00[EUR][1000 genomes]
rs7610644	1.00[AMR][1000 genomes]
rs7611807	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7614614	1.00[AMR][1000 genomes]
rs7619403	1.00[AMR][1000 genomes]
rs7624043	1.00[AMR][1000 genomes]
rs7624112	1.00[AMR][1000 genomes]
rs7625007	1.00[AMR][1000 genomes]
rs7631731	1.00[AMR][1000 genomes]
rs7642697	1.00[AMR][1000 genomes]
rs7644274	1.00[EUR][1000 genomes]
rs7647699	1.00[AMR][1000 genomes]
rs7648014	1.00[AMR][1000 genomes]
rs7648183	1.00[EUR][1000 genomes]
rs7648758	1.00[AMR][1000 genomes]
rs9290460	1.00[AMR][1000 genomes]
rs9840325	1.00[EUR][1000 genomes]
rs9841608	1.00[AMR][1000 genomes]
rs9872125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv992869	chr3:101348433-101360316	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv511216	chr3:101349644-101366921	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101350600-101366800	Weak transcription	Fetal Brain Female	brain
2	chr3:101352600-101354200	Transcr. at gene 5' and 3'	K562	blood
3	chr3:101353200-101355200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:101353600-101354200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:101353600-101355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:101353600-101355200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:101353800-101354200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:101354000-101356400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:101354000-101356800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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