Variant report

Variant	rs7648183
Chromosome Location	chr3:101239011-101239012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:101238476-101239023	HepG2	liver:	n/a	chr3:101238735-101238746
2	ARID3A	chr3:101238591-101239048	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:

Variant related genes	Relation type
FAM172BP	TF binding region
ENSG00000138468	Chromatin interaction

rs_ID	r²[population]
rs58060577	1.00[EUR][1000 genomes]
rs58189156	1.00[EUR][1000 genomes]
rs58823770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59790563	1.00[EUR][1000 genomes]
rs60574960	1.00[EUR][1000 genomes]
rs61050107	1.00[EUR][1000 genomes]
rs6790519	1.00[EUR][1000 genomes]
rs6795215	1.00[EUR][1000 genomes]
rs72948055	1.00[EUR][1000 genomes]
rs72948069	1.00[AMR][1000 genomes]
rs72948070	1.00[EUR][1000 genomes]
rs73863128	1.00[EUR][1000 genomes]
rs73863338	1.00[EUR][1000 genomes]
rs73863341	1.00[EUR][1000 genomes]
rs73863355	1.00[EUR][1000 genomes]
rs73863358	1.00[EUR][1000 genomes]
rs7611807	1.00[EUR][1000 genomes]
rs7611997	1.00[EUR][1000 genomes]
rs7644274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840325	1.00[EUR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101232800-101240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:101236200-101239600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:101236200-101241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:101237000-101240000	Enhancers	HUVEC	blood vessel
5	chr3:101237000-101241200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:101237600-101239400	Enhancers	Primary T cells from cord blood	blood
7	chr3:101237800-101239200	Enhancers	Hela-S3	cervix
8	chr3:101237800-101240000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:101237800-101240000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:101237800-101240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:101237800-101240000	Enhancers	HepG2	liver
12	chr3:101237800-101240000	Weak transcription	HMEC	breast
13	chr3:101238000-101239200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:101238000-101239600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:101238000-101239600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:101238000-101239800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:101238000-101240000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:101238000-101240000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:101238000-101240000	Weak transcription	Thymus	Thymus
20	chr3:101238000-101242200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr3:101238000-101242200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:101238200-101239200	Enhancers	Fetal Intestine Small	intestine
23	chr3:101238200-101239600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:101238200-101240000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:101238400-101239400	Weak transcription	GM12878-XiMat	blood
26	chr3:101238400-101239600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:101238600-101239400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:101238600-101240800	Enhancers	NHEK	skin
29	chr3:101238800-101239200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr3:101238800-101239200	Enhancers	Fetal Intestine Large	intestine
31	chr3:101238800-101239200	Enhancers	Pancreas	Pancrea
32	chr3:101238800-101239800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:101238800-101241800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:101239000-101240400	Enhancers	K562	blood
35	chr3:101239000-101241200	Enhancers	Fetal Thymus	thymus
36	chr3:101239000-101244600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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