Variant report

Variant	rs58823770
Chromosome Location	chr3:101237437-101237438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:134)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:134 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:101237208-101237589	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
2	USF2	chr3:101237287-101237640	Hela-S3	cervix:	n/a	n/a
3	RCOR1	chr3:101236951-101237634	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:101237149-101237899	GM12892	blood:	n/a	n/a
5	TAF1	chr3:101237370-101237781	GM12891	blood:	n/a	n/a
6	TAF1	chr3:101237423-101237704	GM12892	blood:	n/a	n/a
7	YY1	chr3:101237268-101237547	K562	blood:	n/a	n/a
8	POLR2A	chr3:101237233-101237822	GM12891	blood:	n/a	n/a
9	SETDB1	chr3:101237193-101237513	U2OS	brain:	n/a	n/a
10	NFATC1	chr3:101237139-101237735	GM12878	blood:	n/a	n/a
11	FOXM1	chr3:101237074-101237954	GM12878	blood:	n/a	n/a
12	MAX	chr3:101237336-101237537	K562	blood:	n/a	n/a
13	IRF4	chr3:101237074-101237774	GM12878	blood:	n/a	n/a
14	CEBPB	chr3:101237308-101237527	Hela-S3	cervix:	n/a	n/a
15	YY1	chr3:101237197-101237999	GM12878	blood:	n/a	n/a
16	POU2F2	chr3:101237209-101237781	GM12891	blood:	n/a	n/a
17	EP300	chr3:101236961-101237655	GM12878	blood:	n/a	n/a
18	MTA3	chr3:101237050-101238120	GM12878	blood:	n/a	n/a
19	RELA	chr3:101237192-101237807	GM19099	blood:	n/a	n/a
20	FOS	chr3:101237211-101237633	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
21	YY1	chr3:101237163-101237850	K562	blood:	n/a	n/a
22	CEBPB	chr3:101237225-101237510	GM12878	blood:	n/a	n/a
23	STAT1	chr3:101237344-101237510	GM12878	blood:	n/a	n/a
24	RCOR1	chr3:101237121-101237519	K562	blood:	n/a	n/a
25	TCF3	chr3:101237107-101237611	GM12878	blood:	n/a	n/a
26	MAZ	chr3:101237362-101237503	K562	blood:	n/a	n/a
27	STAT5A	chr3:101237191-101237774	GM12878	blood:	n/a	n/a
28	YY1	chr3:101237196-101237967	GM12892	blood:	n/a	n/a
29	POLR2A	chr3:101237249-101237524	MCF10A-Er-Src	breast:	n/a	n/a
30	MYC	chr3:101237361-101237561	MCF10A-Er-Src	breast:	n/a	n/a
31	YY1	chr3:101237265-101237792	GM12891	blood:	n/a	n/a
32	TAF1	chr3:101237223-101237515	Hela-S3	cervix:	n/a	n/a
33	SPI1	chr3:101237191-101237751	GM12891	blood:	n/a	n/a
34	YY1	chr3:101237215-101238002	GM12891	blood:	n/a	n/a
35	BCLAF1	chr3:101237062-101237729	GM12878	blood:	n/a	n/a
36	FOS	chr3:101237231-101237607	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
37	CBX3	chr3:101237218-101237724	K562	blood:	n/a	n/a
38	TCF12	chr3:101237192-101237558	GM12878	blood:	n/a	n/a
39	EBF1	chr3:101237223-101237784	GM12878	blood:	n/a	n/a
40	RUNX3	chr3:101237131-101237951	GM12878	blood:	n/a	n/a
41	POLR2A	chr3:101237216-101237785	GM12878	blood:	n/a	n/a
42	WRNIP1	chr3:101237301-101237793	GM12878	blood:	n/a	n/a
43	TCF3	chr3:101237194-101237558	GM12878	blood:	n/a	n/a
44	POU2F2	chr3:101237196-101237650	GM12891	blood:	n/a	n/a
45	POLR2A	chr3:101237404-101237533	GM12878	blood:	n/a	n/a
46	POLR2A	chr3:101237155-101237886	GM12892	blood:	n/a	n/a
47	SP1	chr3:101237119-101237708	GM12878	blood:	n/a	n/a
48	TBP	chr3:101237264-101237540	Hela-S3	cervix:	n/a	n/a
49	FOS	chr3:101237220-101237593	MCF10A-Er-Src	breast:	n/a	chr3:101237453-101237464
50	BHLHE40	chr3:101237323-101237844	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:
2	chr3:101235055..101237948-chr3:101291499..101293284,2	MCF-7	breast:
3	chr3:101235226..101237848-chr3:101277796..101281104,3	MCF-7	breast:

No data

Variant related genes	Relation type
FAM172BP	TF binding region
ENSG00000174173	Chromatin interaction
ENSG00000138468	Chromatin interaction
ENSG00000081154	Chromatin interaction

rs_ID	r²[population]
rs58060577	1.00[EUR][1000 genomes]
rs58189156	1.00[EUR][1000 genomes]
rs59790563	1.00[EUR][1000 genomes]
rs60574960	1.00[EUR][1000 genomes]
rs61050107	1.00[EUR][1000 genomes]
rs6790519	1.00[EUR][1000 genomes]
rs6795215	1.00[EUR][1000 genomes]
rs72948055	1.00[EUR][1000 genomes]
rs72948069	1.00[AMR][1000 genomes]
rs72948070	1.00[EUR][1000 genomes]
rs73863128	1.00[EUR][1000 genomes]
rs73863338	1.00[EUR][1000 genomes]
rs73863341	1.00[EUR][1000 genomes]
rs73863355	1.00[EUR][1000 genomes]
rs73863358	1.00[EUR][1000 genomes]
rs7611807	1.00[EUR][1000 genomes]
rs7611997	1.00[EUR][1000 genomes]
rs7644274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840325	1.00[EUR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101232800-101238200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:101232800-101240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:101233800-101238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:101236200-101237600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:101236200-101239600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:101236200-101241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr3:101236800-101238400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr3:101237000-101237600	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr3:101237000-101237600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:101237000-101238000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:101237000-101238000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:101237000-101238200	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:101237000-101238200	Enhancers	NHEK	skin
14	chr3:101237000-101240000	Enhancers	HUVEC	blood vessel
15	chr3:101237000-101241200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:101237200-101237600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr3:101237200-101237600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:101237200-101237600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:101237200-101237600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:101237200-101237800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:101237200-101237800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:101237200-101237800	Enhancers	HMEC	breast
23	chr3:101237200-101237800	Flanking Active TSS	K562	blood
24	chr3:101237200-101238000	Enhancers	Fetal Thymus	thymus
25	chr3:101237200-101238200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:101237400-101237600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:101237400-101237600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr3:101237400-101237600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr3:101237400-101237800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:101237400-101237800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:101237400-101237800	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:101237400-101237800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:101237400-101237800	Flanking Active TSS	Hela-S3	cervix
34	chr3:101237400-101237800	Flanking Active TSS	HepG2	liver

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