Variant report

Variant	rs60574960
Chromosome Location	chr3:101315441-101315442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101310187..101312931-chr3:101315424..101317522,3	K562	blood:
2	chr3:101292723..101294522-chr3:101315096..101316928,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55699383	0.86[AFR][1000 genomes]
rs57510745	0.86[AFR][1000 genomes]
rs58060577	1.00[EUR][1000 genomes]
rs58189156	1.00[EUR][1000 genomes]
rs58823770	1.00[EUR][1000 genomes]
rs59790563	1.00[EUR][1000 genomes]
rs60283430	0.86[AFR][1000 genomes]
rs61050107	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6790519	1.00[EUR][1000 genomes]
rs6795215	1.00[EUR][1000 genomes]
rs72948055	1.00[EUR][1000 genomes]
rs72948070	1.00[EUR][1000 genomes]
rs73862803	0.86[AFR][1000 genomes]
rs73862805	0.86[AFR][1000 genomes]
rs73863126	0.86[AFR][1000 genomes]
rs73863128	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863338	1.00[EUR][1000 genomes]
rs73863341	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863355	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863358	1.00[EUR][1000 genomes]
rs73865636	0.86[AFR][1000 genomes]
rs73865639	0.86[AFR][1000 genomes]
rs7611807	1.00[EUR][1000 genomes]
rs7611997	1.00[EUR][1000 genomes]
rs7644274	1.00[EUR][1000 genomes]
rs7648183	1.00[EUR][1000 genomes]
rs9840325	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
3	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:101303400-101316800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:101303600-101316400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:101303800-101316800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:101304200-101319600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:101304800-101317000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:101305800-101318200	Weak transcription	Spleen	Spleen
17	chr3:101305800-101319800	Weak transcription	Pancreas	Pancrea
18	chr3:101305800-101322600	Weak transcription	HSMMtube	muscle
19	chr3:101305800-101324400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:101306000-101318200	Weak transcription	Gastric	stomach
21	chr3:101306400-101316000	Weak transcription	Brain Substantia Nigra	brain
22	chr3:101306800-101317600	Weak transcription	Fetal Kidney	kidney
23	chr3:101307400-101318000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:101309200-101316400	Weak transcription	Hela-S3	cervix
25	chr3:101309600-101316400	Weak transcription	Colonic Mucosa	Colon
26	chr3:101309600-101317200	Weak transcription	HepG2	liver
27	chr3:101309600-101320200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:101309600-101324000	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:101309800-101316000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:101310000-101319800	Weak transcription	Right Ventricle	heart
31	chr3:101310000-101320400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:101310200-101315800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:101310200-101320000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:101310400-101316200	Weak transcription	Fetal Lung	lung
35	chr3:101310400-101316400	Weak transcription	Brain Anterior Caudate	brain
36	chr3:101310400-101316400	Weak transcription	Ovary	ovary
37	chr3:101310400-101317400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:101310400-101317600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:101310400-101320000	Weak transcription	Primary T cells from cord blood	blood
40	chr3:101310400-101320000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:101310400-101320200	Weak transcription	Brain Germinal Matrix	brain
42	chr3:101310400-101322400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:101310400-101324800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr3:101310600-101315600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr3:101310800-101320000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:101311000-101317600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr3:101311000-101319800	Weak transcription	NHLF	lung
48	chr3:101311000-101321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:101311000-101329800	Weak transcription	Thymus	Thymus
50	chr3:101311400-101316400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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