Variant report

Variant	rs73863355
Chromosome Location	chr3:101280895-101280896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101227907..101233845-chr3:101279162..101282528,7	K562	blood:
2	chr22:39915591..39916138-chr3:101280546..101281081,2	Hela-S3	cervix:
3	chr3:101235226..101237848-chr3:101277796..101281104,3	MCF-7	breast:
4	chr3:101279212..101281211-chr3:101443101..101445753,2	MCF-7	breast:
5	chr15:91260605..91261126-chr3:101280286..101281117,2	Hela-S3	cervix:
6	chr3:101230402..101234052-chr3:101279198..101281668,4	MCF-7	breast:
7	chr3:101279766..101282378-chr3:101395488..101397376,2	MCF-7	breast:
8	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:
9	chr3:101280005..101280965-chr6:45345630..45346239,2	Hela-S3	cervix:
10	chr3:101280171..101282152-chr3:101404234..101406900,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128272	Chromatin interaction
ENSG00000182504	Chromatin interaction
ENSG00000197299	Chromatin interaction
ENSG00000138468	Chromatin interaction
ENSG00000175841	Chromatin interaction
ENSG00000114391	Chromatin interaction
ENSG00000066422	Chromatin interaction
ENSG00000196284	Chromatin interaction

rs_ID	r²[population]
rs55699383	0.81[AFR][1000 genomes]
rs57510745	0.81[AFR][1000 genomes]
rs58060577	1.00[EUR][1000 genomes]
rs58189156	1.00[EUR][1000 genomes]
rs58823770	1.00[EUR][1000 genomes]
rs59790563	1.00[EUR][1000 genomes]
rs60283430	0.81[AFR][1000 genomes]
rs60574960	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61050107	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6790519	1.00[EUR][1000 genomes]
rs6795215	1.00[EUR][1000 genomes]
rs72948055	1.00[EUR][1000 genomes]
rs72948070	1.00[EUR][1000 genomes]
rs73862803	0.81[AFR][1000 genomes]
rs73862805	0.81[AFR][1000 genomes]
rs73863126	0.81[AFR][1000 genomes]
rs73863128	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863338	1.00[EUR][1000 genomes]
rs73863341	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863358	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73865636	0.81[AFR][1000 genomes]
rs73865639	0.81[AFR][1000 genomes]
rs7611807	1.00[EUR][1000 genomes]
rs7611997	1.00[EUR][1000 genomes]
rs7644274	1.00[EUR][1000 genomes]
rs7648183	1.00[EUR][1000 genomes]
rs9840325	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101279800-101281000	Active TSS	Monocytes-CD14+_RO01746	blood
2	chr3:101279800-101281600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:101279800-101281600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr3:101279800-101281600	Active TSS	Fetal Intestine Large	intestine
5	chr3:101279800-101281600	Active TSS	K562	blood
6	chr3:101280000-101281400	Active TSS	Adipose Nuclei	Adipose
7	chr3:101280000-101281600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:101280000-101281600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:101280000-101281600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:101280000-101281600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:101280000-101281600	Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr3:101280000-101281600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:101280000-101281600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:101280000-101281600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:101280000-101281600	Active TSS	Duodenum Mucosa	Duodenum
16	chr3:101280000-101281600	Active TSS	Fetal Brain Female	brain
17	chr3:101280000-101281600	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr3:101280000-101281600	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr3:101280000-101281600	Active TSS	Thymus	Thymus
20	chr3:101280000-101281600	Active TSS	GM12878-XiMat	blood
21	chr3:101280000-101281800	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr3:101280000-101281800	Active TSS	Psoas Muscle	Psoas
23	chr3:101280000-101281800	Active TSS	A549	lung
24	chr3:101280000-101282000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:101280200-101281000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:101280200-101281200	Active TSS	Primary monocytes fromperipheralblood	blood
27	chr3:101280200-101281200	Active TSS	Primary T cells fromperipheralblood	blood
28	chr3:101280200-101281200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr3:101280200-101281200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr3:101280200-101281400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:101280200-101281400	Active TSS	Primary B cells from peripheral blood	blood
32	chr3:101280200-101281400	Active TSS	Brain Angular Gyrus	brain
33	chr3:101280200-101281400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:101280200-101281400	Active TSS	Fetal Thymus	thymus
35	chr3:101280200-101281400	Active TSS	Stomach Smooth Muscle	stomach
36	chr3:101280200-101281600	Active TSS	H1 Cell Line	embryonic stem cell
37	chr3:101280200-101281600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:101280200-101281600	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr3:101280200-101281600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr3:101280200-101281600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:101280200-101281600	Active TSS	Primary T cells from cord blood	blood
42	chr3:101280200-101281600	Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr3:101280200-101281600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:101280200-101281600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:101280200-101281600	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr3:101280200-101281600	Active TSS	Liver	Liver
47	chr3:101280200-101281600	Active TSS	Brain Anterior Caudate	brain
48	chr3:101280200-101281600	Active TSS	Brain Cingulate Gyrus	brain
49	chr3:101280200-101281600	Active TSS	Brain Hippocampus Middle	brain
50	chr3:101280200-101281600	Active TSS	Brain Inferior Temporal Lobe	brain

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