Variant report

Variant	rs9841608
Chromosome Location	chr3:101365888-101365889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13317356	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13317716	1.00[ASW][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433837	1.00[AMR][1000 genomes]
rs16843985	1.00[AMR][1000 genomes]
rs16844031	1.00[AMR][1000 genomes]
rs28812605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776266	1.00[AMR][1000 genomes]
rs6790519	1.00[AMR][1000 genomes]
rs6792530	1.00[AMR][1000 genomes]
rs6795215	1.00[AMR][1000 genomes]
rs6798263	1.00[AMR][1000 genomes]
rs7610644	1.00[AMR][1000 genomes]
rs7611807	1.00[AMR][1000 genomes]
rs7611997	1.00[AMR][1000 genomes]
rs7614614	1.00[AMR][1000 genomes]
rs7619403	1.00[AMR][1000 genomes]
rs7624043	1.00[AMR][1000 genomes]
rs7624112	1.00[AMR][1000 genomes]
rs7625007	1.00[AMR][1000 genomes]
rs7631731	1.00[AMR][1000 genomes]
rs7642697	1.00[AMR][1000 genomes]
rs7647699	1.00[AMR][1000 genomes]
rs7648014	1.00[AMR][1000 genomes]
rs7648758	1.00[AMR][1000 genomes]
rs9290460	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv511216	chr3:101349644-101366921	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101350600-101366800	Weak transcription	Fetal Brain Female	brain
2	chr3:101354800-101366800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:101355000-101366800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:101355200-101367400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:101355200-101367600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:101355600-101366400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:101355600-101366600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:101355600-101366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:101355600-101366600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:101355600-101367000	Weak transcription	A549	lung
11	chr3:101355600-101367000	Weak transcription	Dnd41	blood
12	chr3:101355600-101367400	Weak transcription	Right Ventricle	heart
13	chr3:101355600-101368600	Weak transcription	GM12878-XiMat	blood
14	chr3:101356000-101367400	Weak transcription	Aorta	Aorta
15	chr3:101357400-101366600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:101357400-101367400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:101357800-101369400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:101361000-101367000	Weak transcription	Placenta	Placenta
19	chr3:101361400-101366800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:101362400-101366600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:101362600-101366000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:101362600-101366400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:101362800-101369800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:101362800-101391600	Weak transcription	Stomach Mucosa	stomach
25	chr3:101363000-101367600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:101363000-101369800	Weak transcription	Brain Angular Gyrus	brain
27	chr3:101363000-101381800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:101363000-101394400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr3:101363200-101366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:101363200-101366600	Weak transcription	Fetal Thymus	thymus
31	chr3:101363200-101366800	Weak transcription	Fetal Lung	lung
32	chr3:101363200-101367000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:101363200-101367200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:101363200-101367400	Weak transcription	Esophagus	oesophagus
35	chr3:101363200-101369800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:101363200-101369800	Weak transcription	Small Intestine	intestine
37	chr3:101363200-101370000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:101363200-101394400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:101363400-101366800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:101363400-101367200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:101363400-101367200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:101363400-101367400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:101363400-101367400	Weak transcription	NH-A	brain
44	chr3:101363400-101367400	Weak transcription	NHLF	lung
45	chr3:101363400-101368000	Weak transcription	K562	blood
46	chr3:101363400-101368600	Weak transcription	NHDF-Ad	bronchial
47	chr3:101363400-101368800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:101363400-101382800	Weak transcription	Fetal Heart	heart
49	chr3:101363400-101391400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:101363600-101366000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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