Variant report

Variant	rs7662794
Chromosome Location	chr4:143399201-143399202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143392966..143400087-chr4:143764739..143770446,12	MCF-7	breast:
2	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:
3	chr4:143351692..143359150-chr4:143392769..143399702,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251248	Chromatin interaction
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10008498	0.89[ASN][1000 genomes]
rs10012476	0.89[EUR][1000 genomes]
rs10015184	0.89[EUR][1000 genomes]
rs10015271	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1013397	0.89[EUR][1000 genomes]
rs12644565	0.89[EUR][1000 genomes]
rs1391099	0.87[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1425537	0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1489581	0.87[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs17016163	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17016170	0.89[EUR][1000 genomes]
rs17016195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1817970	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2322705	0.91[EUR][1000 genomes]
rs2322706	0.89[EUR][1000 genomes]
rs2322795	0.90[JPT][hapmap]
rs2874841	0.87[ASN][1000 genomes]
rs28823374	0.91[EUR][1000 genomes]
rs28850298	0.91[EUR][1000 genomes]
rs28861843	0.92[EUR][1000 genomes]
rs34900920	0.91[EUR][1000 genomes]
rs3863128	0.85[ASN][1000 genomes]
rs3913163	0.90[AFR][1000 genomes]
rs3913164	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3913165	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345256	0.91[EUR][1000 genomes]
rs4956444	0.85[ASN][1000 genomes]
rs6822263	0.82[CHB][hapmap]
rs7668133	0.89[EUR][1000 genomes]
rs7695918	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9308151	0.84[ASN][1000 genomes]
rs9308152	0.88[EUR][1000 genomes]
rs979511	0.82[CHB][hapmap]
rs9986090	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143369200-143410600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143371600-143400800	Weak transcription	Aorta	Aorta
3	chr4:143395400-143403000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143396800-143401400	Weak transcription	NH-A	brain
5	chr4:143396800-143406000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:143396800-143406800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:143397000-143406200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:143397200-143406000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:143397400-143414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:143398000-143401200	Weak transcription	A549	lung

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