Variant report

Variant	rs771974
Chromosome Location	chr12:63392010-63392011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1026096	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506470	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249935	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12813083	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821413	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821849	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829134	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098568	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098575	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098581	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098689	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098761	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098763	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098774	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098779	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098789	1.00[ASN][1000 genomes]
rs17098794	1.00[ASN][1000 genomes]
rs1731661	1.00[ASN][1000 genomes]
rs17739095	1.00[ASN][1000 genomes]
rs2464118	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2840070	1.00[ASN][1000 genomes]
rs2884542	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34203667	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35910451	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67784802	1.00[ASN][1000 genomes]
rs67994077	1.00[ASN][1000 genomes]
rs699591	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs699593	1.00[ASN][1000 genomes]
rs699615	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699618	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs71450600	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465172	1.00[ASN][1000 genomes]
rs71465180	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465181	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771976	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772538	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs772541	1.00[ASN][1000 genomes]
rs9971730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63389200-63393200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:63389600-63392200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:63389600-63393000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:63390800-63394400	Weak transcription	Aorta	Aorta

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