Variant report

Variant	rs7758725
Chromosome Location	chr6:144570727-144570728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1998368	0.84[EUR][1000 genomes]
rs56386530	1.00[EUR][1000 genomes]
rs56858804	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570615	0.84[EUR][1000 genomes]
rs73778569	1.00[EUR][1000 genomes]
rs7769365	0.92[EUR][1000 genomes]
rs7771665	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9496895	0.82[EUR][1000 genomes]
rs9496976	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144568400-144574000	Weak transcription	Fetal Heart	heart
2	chr6:144569200-144570800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:144569200-144571000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:144569200-144571200	Enhancers	HSMM	muscle
5	chr6:144569200-144571600	Enhancers	HSMMtube	muscle
6	chr6:144569400-144571000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:144569400-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:144569400-144571000	Enhancers	NH-A	brain
9	chr6:144569400-144571200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:144569400-144571400	Enhancers	NHLF	lung
11	chr6:144569400-144581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144569800-144570800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:144569800-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:144569800-144571000	Flanking Active TSS	NHDF-Ad	bronchial
15	chr6:144569800-144571200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:144570000-144571000	Flanking Active TSS	Osteobl	bone
18	chr6:144570200-144571000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:144570400-144570800	Enhancers	Aorta	Aorta
20	chr6:144570400-144571000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:144570400-144571200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:144570400-144572000	Enhancers	Fetal Muscle Leg	muscle
23	chr6:144570600-144571000	Enhancers	Fetal Thymus	thymus
24	chr6:144570600-144571600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:144570600-144572600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links