Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11969732	0.87[AFR][1000 genomes]
rs17073528	1.00[ASN][1000 genomes]
rs17073529	1.00[ASN][1000 genomes]
rs17073539	1.00[ASN][1000 genomes]
rs17073544	1.00[ASN][1000 genomes]
rs17840301	1.00[ASN][1000 genomes]
rs1998367	1.00[ASN][1000 genomes]
rs1998368	0.92[EUR][1000 genomes]
rs56386530	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57380483	1.00[ASN][1000 genomes]
rs57485302	1.00[ASN][1000 genomes]
rs57704478	1.00[ASN][1000 genomes]
rs58396690	1.00[ASN][1000 genomes]
rs58590469	1.00[ASN][1000 genomes]
rs58857193	1.00[ASN][1000 genomes]
rs60053855	1.00[ASN][1000 genomes]
rs60439721	1.00[ASN][1000 genomes]
rs60811448	1.00[ASN][1000 genomes]
rs6570615	0.92[EUR][1000 genomes]
rs73778566	0.83[AFR][1000 genomes]
rs73778569	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7758725	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7769365	0.84[EUR][1000 genomes]
rs7771665	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144553600-144560800	Weak transcription	Right Atrium	heart

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