Variant report

Variant	rs1998368
Chromosome Location	chr6:144549707-144549708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11970193	0.81[AMR][1000 genomes]
rs17073524	0.95[ASN][1000 genomes]
rs56386530	0.84[EUR][1000 genomes]
rs56858804	0.92[EUR][1000 genomes]
rs59936141	0.98[ASN][1000 genomes]
rs60484357	0.98[ASN][1000 genomes]
rs61017072	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61211447	0.98[ASN][1000 genomes]
rs6570615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778569	0.84[EUR][1000 genomes]
rs7741809	0.81[AMR][1000 genomes]
rs7750153	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7758725	0.84[EUR][1000 genomes]
rs7769365	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7771665	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:144545400-144550200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:144545400-144550400	Weak transcription	HSMM	muscle
6	chr6:144549600-144550800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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