Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144546836..144549581-chr6:144552888..144555607,2	K562	blood:
2	chr6:144548086..144549908-chr6:144553718..144555836,2	MCF-7	breast:
3	chr6:144546072..144548872-chr6:144549904..144552133,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967470	1.00[ASN][1000 genomes]
rs11969019	1.00[ASN][1000 genomes]
rs11969732	1.00[ASN][1000 genomes]
rs11970193	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1998368	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55945140	1.00[ASN][1000 genomes]
rs56386530	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858804	0.84[EUR][1000 genomes]
rs6570615	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73778566	1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741809	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7750153	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7758725	0.92[EUR][1000 genomes]
rs7764702	1.00[ASN][1000 genomes]
rs7768087	1.00[ASN][1000 genomes]
rs7768425	1.00[ASN][1000 genomes]
rs7771665	1.00[CEU][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774368	1.00[ASN][1000 genomes]
rs7775272	1.00[ASN][1000 genomes]
rs9496896	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144542000-144549600	Weak transcription	HSMMtube	muscle
4	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:144545400-144550200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:144545400-144550400	Weak transcription	HSMM	muscle

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