Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
2	chr6:144499605..144501312-chr6:144540147..144541941,2	K562	blood:
3	chr6:144261264..144261938-chr6:144540067..144541208,3	K562	blood:
4	chr6:144540620..144542713-chr6:144546174..144548054,2	MCF-7	breast:
5	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:
6	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967470	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11969019	1.00[ASN][1000 genomes]
rs11969732	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11970193	1.00[ASN][1000 genomes]
rs1998368	0.84[EUR][1000 genomes]
rs55945140	1.00[ASN][1000 genomes]
rs56858804	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570615	0.84[EUR][1000 genomes]
rs73778566	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73778567	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73778569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741809	1.00[ASN][1000 genomes]
rs7758725	1.00[EUR][1000 genomes]
rs7764702	1.00[ASN][1000 genomes]
rs7768087	1.00[ASN][1000 genomes]
rs7768425	1.00[ASN][1000 genomes]
rs7769365	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771665	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774368	1.00[ASN][1000 genomes]
rs7775272	1.00[ASN][1000 genomes]
rs9496895	0.82[EUR][1000 genomes]
rs9496896	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538000-144541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:144538600-144541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:144538800-144541000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:144538800-144541000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:144538800-144541000	Weak transcription	HSMMtube	muscle
10	chr6:144538800-144541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:144538800-144541200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:144540800-144541200	Weak transcription	HSMM	muscle

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