Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:144523085-144525504	K562	blood:	n/a	n/a

Variant related genes	Relation type
TPT1P4	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967470	1.00[ASN][1000 genomes]
rs11969019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969732	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970193	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998368	0.81[AMR][1000 genomes]
rs55945140	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386530	1.00[ASN][1000 genomes]
rs57278545	1.00[EUR][1000 genomes]
rs61017072	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6570615	0.81[AMR][1000 genomes]
rs73778566	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	1.00[ASN][1000 genomes]
rs7750153	0.82[AMR][1000 genomes]
rs7764702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769365	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771665	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7774368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144522200-144530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144523600-144524600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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