Variant report

Variant	rs55945140
Chromosome Location	chr6:144533526-144533527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11967470	1.00[ASN][1000 genomes]
rs11969019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386530	1.00[ASN][1000 genomes]
rs57278545	0.93[EUR][1000 genomes]
rs61017072	0.87[EUR][1000 genomes]
rs73778566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	1.00[ASN][1000 genomes]
rs7741809	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764702	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769365	1.00[ASN][1000 genomes]
rs7771665	1.00[ASN][1000 genomes]
rs7774368	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775272	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496896	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144530400-144536200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144531200-144534400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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