Variant report

Variant	rs7771665
Chromosome Location	chr6:144539961-144539962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144425974..144426502-chr6:144539958..144540611,2	MCF-7	breast:
2	chr6:144413850..144419094-chr6:144535932..144540083,10	K562	blood:
3	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
4	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
5	chr6:144263359..144263987-chr6:144539941..144540854,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967470	1.00[ASN][1000 genomes]
rs11969019	1.00[ASN][1000 genomes]
rs11969732	1.00[ASN][1000 genomes]
rs11970193	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1998368	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55945140	1.00[ASN][1000 genomes]
rs56386530	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858804	0.84[EUR][1000 genomes]
rs6570615	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73778566	1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741809	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7750153	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7758725	0.92[EUR][1000 genomes]
rs7764702	1.00[ASN][1000 genomes]
rs7768087	1.00[ASN][1000 genomes]
rs7768425	1.00[ASN][1000 genomes]
rs7769365	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774368	1.00[ASN][1000 genomes]
rs7775272	1.00[ASN][1000 genomes]
rs9496896	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538000-144540000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr6:144538000-144540000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr6:144538000-144541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:144538200-144540000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:144538200-144540000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:144538200-144540000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:144538200-144540000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:144538200-144540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:144538400-144540400	Enhancers	Primary T cells from cord blood	blood
12	chr6:144538600-144540000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:144538600-144540400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:144538600-144541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:144538800-144540000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:144538800-144540000	Enhancers	Dnd41	blood
17	chr6:144538800-144540400	Weak transcription	Fetal Heart	heart
18	chr6:144538800-144540600	Weak transcription	HSMM	muscle
19	chr6:144538800-144541000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:144538800-144541000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:144538800-144541000	Weak transcription	HSMMtube	muscle
24	chr6:144538800-144541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:144538800-144541200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:144539000-144540200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:144539200-144540000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:144539400-144540000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:144539400-144540000	Enhancers	HepG2	liver
32	chr6:144539600-144540000	Enhancers	Primary B cells from cord blood	blood
33	chr6:144539600-144540000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:144539600-144540000	Enhancers	Fetal Thymus	thymus
35	chr6:144539800-144540000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:144539800-144540000	Enhancers	Brain Substantia Nigra	brain
37	chr6:144539800-144540000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:144539800-144540000	Enhancers	Small Intestine	intestine
39	chr6:144539800-144540000	Enhancers	Thymus	Thymus

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