Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144521656..144524186-chr6:144530530..144532324,2	K562	blood:
2	chr6:144529710..144531964-chr6:144532893..144535500,2	K562	blood:
3	chr6:144515219..144517320-chr6:144531063..144533998,2	K562	blood:
4	chr6:144531404..144534251-chr6:144536008..144537588,2	K562	blood:

Variant related genes	Relation type
ENSG00000217027	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11967470	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11969019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386530	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56858804	0.87[AFR][1000 genomes]
rs57278545	0.93[EUR][1000 genomes]
rs61017072	0.87[EUR][1000 genomes]
rs73778566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7741809	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764702	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769365	1.00[ASN][1000 genomes]
rs7771665	1.00[ASN][1000 genomes]
rs7774368	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775272	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496896	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3340901	chr6:144529309-144531807	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144530400-144536200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144531200-144534400	Weak transcription	Fetal Brain Female	brain

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