Variant report

Variant	rs11967470
Chromosome Location	chr6:144534905-144534906
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11963031	1.00[AMR][1000 genomes]
rs11969019	1.00[ASN][1000 genomes]
rs11969732	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11970193	1.00[ASN][1000 genomes]
rs55945140	1.00[ASN][1000 genomes]
rs56386530	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73778566	1.00[ASN][1000 genomes]
rs73778567	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73778569	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7741809	1.00[ASN][1000 genomes]
rs7764702	1.00[ASN][1000 genomes]
rs7768087	1.00[ASN][1000 genomes]
rs7768425	1.00[ASN][1000 genomes]
rs7769365	1.00[ASN][1000 genomes]
rs7771665	1.00[ASN][1000 genomes]
rs7774368	1.00[ASN][1000 genomes]
rs7775272	1.00[ASN][1000 genomes]
rs9496896	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144530400-144536200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144533600-144536200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144534400-144536200	Weak transcription	Lung	lung
4	chr6:144534600-144536400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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