Variant report

Variant	rs9496896
Chromosome Location	chr6:144517191-144517192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144515219..144517320-chr6:144531063..144533998,2	K562	blood:
2	chr6:144509634..144515392-chr6:144515473..144518844,5	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11967470	1.00[ASN][1000 genomes]
rs11969019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969732	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945140	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386530	1.00[ASN][1000 genomes]
rs57278545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61017072	0.94[EUR][1000 genomes]
rs73778566	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778567	1.00[ASN][1000 genomes]
rs73778569	1.00[ASN][1000 genomes]
rs7741809	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768087	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768425	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769365	1.00[ASN][1000 genomes]
rs7771665	1.00[ASN][1000 genomes]
rs7774368	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:144508800-144520000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144509000-144520000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:144509000-144520000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144509200-144519200	Weak transcription	Spleen	Spleen
8	chr6:144509400-144520200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:144509800-144519400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:144512000-144518200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:144515600-144517600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:144516200-144517200	Weak transcription	Placenta	Placenta
13	chr6:144516200-144517200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:144516200-144522000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:144516400-144517200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:144516600-144517400	Enhancers	NHEK	skin
17	chr6:144516800-144517200	Enhancers	NHLF	lung
18	chr6:144516800-144517200	Enhancers	Osteobl	bone
19	chr6:144516800-144517400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:144516800-144517400	Enhancers	HMEC	breast
21	chr6:144517000-144517200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:144517000-144517200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:144517000-144517200	Enhancers	Colon Smooth Muscle	Colon
24	chr6:144517000-144517400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:144517000-144517400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:144517000-144517400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:144517000-144517600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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