Variant report

Variant	rs7766908
Chromosome Location	chr6:147221530-147221531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147221492..147224047-chr6:147523320..147525428,2	K562	blood:
2	chr6:147220668..147222971-chr6:147322912..147325249,2	K562	blood:
3	chr6:147219792..147222119-chr6:147481402..147483994,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1119876	0.84[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1122570	0.83[CEU][hapmap]
rs1324683	0.89[ASN][1000 genomes]
rs1324685	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1408575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853696	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1924691	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1924693	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2224906	0.82[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2328769	0.84[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs6926192	0.87[ASN][1000 genomes]
rs7740261	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7751561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755795	0.93[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs912581	0.84[CEU][hapmap]
rs927672	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9377033	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9377034	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386175	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390437	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs9390438	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403826	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403827	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:147216000-147224600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:147218000-147225800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147218200-147226600	Weak transcription	NHLF	lung
5	chr6:147219800-147223800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:147220000-147223200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:147220400-147223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:147220600-147223200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:147221400-147224800	Enhancers	K562	blood

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