Variant report

Variant	rs1119876
Chromosome Location	chr6:147196368-147196369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147195935..147198444-chr6:147269151..147270925,2	K562	blood:
2	chr6:147196025..147200245-chr6:147523517..147529134,7	K562	blood:
3	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1122570	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1324683	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324685	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408575	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1543548	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1853696	1.00[CHB][hapmap]
rs1924691	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1924693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224906	0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2328769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328770	0.91[JPT][hapmap]
rs259371	0.83[JPT][hapmap]
rs3818410	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6570778	0.92[JPT][hapmap]
rs6915391	0.92[JPT][hapmap]
rs6926192	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929209	0.92[JPT][hapmap]
rs6937015	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7740261	0.86[ASN][1000 genomes]
rs7751561	0.89[ASN][1000 genomes]
rs7755795	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766908	0.84[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs912581	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs927672	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9377033	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9377034	0.90[ASN][1000 genomes]
rs9386175	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs9390437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390438	0.89[ASN][1000 genomes]
rs9399587	0.91[JPT][hapmap]
rs9399588	0.80[ASN][1000 genomes]
rs9403826	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9403827	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147189800-147196400	Enhancers	K562	blood
3	chr6:147192400-147196600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
8	chr6:147193400-147198600	Weak transcription	Liver	Liver
9	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
11	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:147195600-147197400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:147196000-147196400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:147196000-147196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:147196000-147196400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:147196000-147196800	Enhancers	Monocytes-CD14+_RO01746	blood

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