Variant report

Variant	rs6937015
Chromosome Location	chr6:147187237-147187238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147181856..147183431-chr6:147186533..147188498,2	MCF-7	breast:
2	chr20:54374371..54375033-chr6:147186682..147187389,2	MCF-7	breast:
3	chr6:147185541..147187437-chr6:147534820..147537621,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1119876	0.88[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1122570	0.88[CEU][hapmap];0.90[MEX][hapmap]
rs1324680	0.84[ASN][1000 genomes]
rs1324683	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1324685	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1408574	0.82[ASN][1000 genomes]
rs1408575	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs1543548	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1853696	0.84[CHB][hapmap]
rs1924691	0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs1924692	0.83[CHD][hapmap]
rs1924693	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs1924695	0.84[ASN][1000 genomes]
rs2224906	0.88[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2328769	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2328770	0.82[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs259371	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs3818410	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4896892	0.84[ASN][1000 genomes]
rs6570778	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6915391	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6926192	0.85[ASN][1000 genomes]
rs6929209	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7740261	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7755795	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7766908	0.82[JPT][hapmap]
rs912581	0.88[CEU][hapmap]
rs927672	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs9377033	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs9386175	0.86[CEU][hapmap];0.83[ASN][1000 genomes]
rs9390437	0.88[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs9399587	0.82[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs9399588	0.83[ASN][1000 genomes]
rs9403826	0.81[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs9403827	0.83[ASN][1000 genomes]
rs9497647	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
3	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:147184400-147188600	Weak transcription	Liver	Liver
5	chr6:147185400-147192000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:147185800-147191200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147186000-147191400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:147186200-147191600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:147186400-147192800	Weak transcription	Esophagus	oesophagus
10	chr6:147187200-147187600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:147187200-147187600	Flanking Active TSS	K562	blood
12	chr6:147187200-147188000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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