Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf103-1	chr6:147183902-147184350	NONHSAT115442

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1119876	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1324680	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324683	0.82[ASN][1000 genomes]
rs1324685	1.00[JPT][hapmap]
rs1408574	0.85[ASN][1000 genomes]
rs1408575	0.91[JPT][hapmap]
rs1924691	1.00[JPT][hapmap]
rs1924695	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2224906	0.84[JPT][hapmap]
rs2328769	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2328770	0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs259371	0.83[JPT][hapmap]
rs4896892	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570778	0.86[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6915391	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6926089	0.81[EUR][1000 genomes]
rs6926192	0.83[ASN][1000 genomes]
rs6929209	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6937015	0.83[ASN][1000 genomes]
rs7755795	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7766908	0.83[JPT][hapmap]
rs9377032	0.85[CEU][hapmap]
rs9390437	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9399587	0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403826	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs9497647	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179000-147186000	Weak transcription	Esophagus	oesophagus
2	chr6:147179600-147184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147179600-147185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:147181200-147184400	Enhancers	Liver	Liver
6	chr6:147182000-147186000	Weak transcription	NHLF	lung
7	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
8	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:147183000-147187200	Enhancers	K562	blood
10	chr6:147183800-147184400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:147184000-147184400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:147184200-147184400	Enhancers	Brain Anterior Caudate	brain

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