Variant report

Variant	rs9390437
Chromosome Location	chr6:147209226-147209227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147207642..147209637-chr6:147480504..147482096,2	K562	blood:
3	chr6:147200700..147210109-chr6:147522792..147529002,17	K562	blood:
4	chr6:147206608..147209541-chr6:147294040..147296917,2	K562	blood:
5	chr6:147207096..147209923-chr6:147534752..147537140,2	K562	blood:
6	chr6:147199212..147201733-chr6:147207902..147209684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1022877	0.81[CHD][hapmap]
rs1119876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1122570	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1324683	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324684	0.81[CHD][hapmap]
rs1324685	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408575	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1543548	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1853696	1.00[CHB][hapmap]
rs1924691	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1924693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224906	0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2328769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328770	0.91[JPT][hapmap]
rs259371	0.83[JPT][hapmap]
rs3818410	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6570778	0.91[JPT][hapmap]
rs6915391	0.91[JPT][hapmap]
rs6926192	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6929209	0.91[JPT][hapmap]
rs6937015	0.84[ASN][1000 genomes]
rs7740261	0.86[ASN][1000 genomes]
rs7751561	0.89[ASN][1000 genomes]
rs7755795	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766908	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs912581	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs927672	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9377033	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.88[ASN][1000 genomes]
rs9377034	0.93[ASN][1000 genomes]
rs9386175	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs9390438	0.92[ASN][1000 genomes]
rs9399587	0.91[JPT][hapmap]
rs9399588	0.80[ASN][1000 genomes]
rs9403826	0.92[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9403827	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147207000-147213000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:147207400-147212400	Weak transcription	NHDF-Ad	bronchial
5	chr6:147207600-147212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:147208000-147209600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:147208200-147209600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:147208400-147209400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:147208400-147209400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:147208400-147209400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:147208600-147209400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:147208600-147209600	Flanking Active TSS	K562	blood
13	chr6:147208800-147209600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:147208800-147212400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:147209200-147210000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:147209200-147210200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:147209200-147212400	Weak transcription	NHLF	lung

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