Variant report

Variant	rs927672
Chromosome Location	chr6:147216278-147216279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147215337..147217786-chr6:147543040..147544662,2	K562	blood:
3	chr6:147147256..147150089-chr6:147215364..147218093,2	K562	blood:
4	chr6:147210436..147217668-chr6:147521992..147527584,13	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1119876	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1122570	0.92[CHB][hapmap]
rs1324683	0.90[ASN][1000 genomes]
rs1324685	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs1408575	0.88[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853696	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1924691	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs1924693	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1966195	0.81[JPT][hapmap]
rs2224906	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328769	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6926192	0.90[ASN][1000 genomes]
rs7740261	0.85[ASN][1000 genomes]
rs7751561	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7755795	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7766908	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs912581	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs9377033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9377034	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386175	0.91[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390437	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9390438	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403826	0.96[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403827	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147214400-147216400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:147214600-147217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147215000-147217800	Weak transcription	NHLF	lung
4	chr6:147215000-147219200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:147215200-147217400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:147215200-147219600	Flanking Active TSS	K562	blood
7	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:147215600-147216400	Enhancers	Fetal Intestine Large	intestine
9	chr6:147216000-147217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:147216000-147217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:147216000-147224600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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