Variant report

Variant	rs1853696
Chromosome Location	chr6:147208621-147208622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1119876	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1122570	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1324683	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324685	0.93[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408575	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs1543548	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1924691	0.88[ASN][1000 genomes]
rs1924693	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1966195	0.81[JPT][hapmap]
rs2224906	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2328769	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818410	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6926192	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6937015	0.84[ASN][1000 genomes]
rs7740261	0.86[ASN][1000 genomes]
rs7751561	0.89[ASN][1000 genomes]
rs7755795	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766908	0.93[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs912581	0.81[CHB][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs927672	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs9377033	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9377034	0.93[ASN][1000 genomes]
rs9386175	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9390437	1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390438	0.92[ASN][1000 genomes]
rs9399588	0.80[ASN][1000 genomes]
rs9403826	0.92[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs9403827	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147207000-147213000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:147207400-147209200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:147207400-147212400	Weak transcription	NHDF-Ad	bronchial
6	chr6:147207600-147208800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:147207600-147212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:147208000-147209600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:147208200-147209600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:147208400-147209400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:147208400-147209400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:147208400-147209400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:147208600-147209000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:147208600-147209000	Enhancers	Placenta	Placenta
15	chr6:147208600-147209200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:147208600-147209200	Enhancers	NHLF	lung
17	chr6:147208600-147209400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:147208600-147209600	Flanking Active TSS	K562	blood

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