Variant report

Variant	rs7846908
Chromosome Location	chr9:72919634-72919635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72871762..72875309-chr9:72918153..72920049,3	K562	blood:

Variant related genes	Relation type
ENSG00000198887	Chromatin interaction
ENSG00000268364	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10125454	0.81[ASN][1000 genomes]
rs11142375	0.83[ASN][1000 genomes]
rs17051515	0.90[ASN][1000 genomes]
rs17453310	0.81[ASN][1000 genomes]
rs17454349	0.90[ASN][1000 genomes]
rs17454433	0.90[ASN][1000 genomes]
rs17526808	0.90[ASN][1000 genomes]
rs1887451	0.81[ASN][1000 genomes]
rs1927101	0.90[ASN][1000 genomes]
rs1927113	0.81[ASN][1000 genomes]
rs2148863	0.81[ASN][1000 genomes]
rs5019539	0.90[ASN][1000 genomes]
rs6560015	0.90[ASN][1000 genomes]
rs66524845	0.80[ASN][1000 genomes]
rs7024812	0.90[ASN][1000 genomes]
rs7041380	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7043789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047789	0.80[ASN][1000 genomes]
rs73647464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647492	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7853298	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
3	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
5	chr9:72877000-72939800	Weak transcription	Gastric	stomach
6	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:72891000-72923400	Strong transcription	Dnd41	blood
11	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:72900600-72924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
15	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
17	chr9:72907000-72924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:72908000-72924400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:72908800-72942800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr9:72909200-72927400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:72909800-72920800	Weak transcription	K562	blood
23	chr9:72910000-72922600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:72910200-72924600	Weak transcription	Psoas Muscle	Psoas
25	chr9:72910800-72929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:72911000-72921200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:72911200-72924000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:72911400-72930000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:72911600-72925000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr9:72911800-72923200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:72912000-72927400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr9:72912000-72943000	Strong transcription	HSMM	muscle
33	chr9:72912200-72924400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:72912200-72925800	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:72912200-72927600	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr9:72912200-72929200	Strong transcription	Osteobl	bone
37	chr9:72912400-72923000	Strong transcription	Fetal Lung	lung
38	chr9:72912400-72930600	Strong transcription	Fetal Intestine Large	intestine
39	chr9:72912600-72920600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr9:72912600-72947800	Strong transcription	Placenta	Placenta
41	chr9:72912800-72927600	Strong transcription	Fetal Thymus	thymus
42	chr9:72913600-72922000	Weak transcription	NHLF	lung
43	chr9:72913600-72928800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr9:72913600-72928800	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:72913800-72957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:72914000-72929400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:72914600-72921200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:72915000-72927400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr9:72915200-72922200	Weak transcription	Fetal Brain Female	brain
50	chr9:72915400-72920200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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