Variant report

Variant	rs7911462
Chromosome Location	chr10:19423355-19423356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11008499	1.00[EUR][1000 genomes]
rs55668034	1.00[EUR][1000 genomes]
rs57570174	1.00[EUR][1000 genomes]
rs57609165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58399335	1.00[EUR][1000 genomes]
rs59497774	1.00[EUR][1000 genomes]
rs60003350	1.00[EUR][1000 genomes]
rs61336082	1.00[EUR][1000 genomes]
rs7071296	1.00[EUR][1000 genomes]
rs7074196	1.00[EUR][1000 genomes]
rs7100427	1.00[EUR][1000 genomes]
rs71387048	1.00[EUR][1000 genomes]
rs73591927	1.00[EUR][1000 genomes]
rs73591928	1.00[EUR][1000 genomes]
rs73591930	1.00[EUR][1000 genomes]
rs73593848	1.00[EUR][1000 genomes]
rs74118813	1.00[EUR][1000 genomes]
rs74118832	1.00[EUR][1000 genomes]
rs74118860	1.00[EUR][1000 genomes]
rs74118882	1.00[EUR][1000 genomes]
rs74118887	1.00[EUR][1000 genomes]
rs74118890	1.00[EUR][1000 genomes]
rs74118891	1.00[EUR][1000 genomes]
rs74118893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74120741	1.00[EUR][1000 genomes]
rs74121424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898804	1.00[EUR][1000 genomes]
rs7902869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7911603	1.00[EUR][1000 genomes]
rs7922928	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv948242	chr10:19401696-19428561	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19413600-19424000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19414800-19434800	Weak transcription	Small Intestine	intestine
3	chr10:19419400-19425600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19422600-19423400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:19422800-19423600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:19422800-19423600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr10:19423200-19423600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links