Variant report

Variant	rs7930769
Chromosome Location	chr11:58100281-58100282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10400284	1.00[AMR][1000 genomes]
rs12284213	1.00[AMR][1000 genomes]
rs12295700	1.00[AMR][1000 genomes]
rs7102563	1.00[AMR][1000 genomes]
rs7108127	1.00[AMR][1000 genomes]
rs7119625	1.00[AMR][1000 genomes]
rs7124621	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7125365	1.00[AMR][1000 genomes]
rs7126120	1.00[AMR][1000 genomes]
rs7127636	1.00[AMR][1000 genomes]
rs7927692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58098800-58101600	Weak transcription	NH-A	brain
3	chr11:58098800-58102200	Weak transcription	NHLF	lung
4	chr11:58099000-58101600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:58099000-58101600	Weak transcription	Osteobl	bone
6	chr11:58099000-58102000	Weak transcription	HSMM	muscle
7	chr11:58100000-58101400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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