Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10400284	1.00[AMR][1000 genomes]
rs12295700	1.00[AMR][1000 genomes]
rs6591481	1.00[AMR][1000 genomes]
rs6591482	1.00[AMR][1000 genomes]
rs7108127	1.00[AMR][1000 genomes]
rs7112211	1.00[AMR][1000 genomes]
rs7113847	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7119625	1.00[AMR][1000 genomes]
rs7123874	1.00[AMR][1000 genomes]
rs7124590	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7124621	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7127636	1.00[AMR][1000 genomes]
rs7927692	1.00[AMR][1000 genomes]
rs7928361	1.00[AMR][1000 genomes]
rs7930769	1.00[AMR][1000 genomes]
rs7931125	1.00[AMR][1000 genomes]
rs7944349	1.00[AMR][1000 genomes]
rs7944661	1.00[AMR][1000 genomes]
rs7945130	1.00[AMR][1000 genomes]
rs7945334	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9667413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58266800-58278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:58266800-58278800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:58267000-58279600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:58269400-58277200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:58275400-58281000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:58276400-58277600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:58276600-58277400	Enhancers	HepG2	liver

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