Variant report

Variant	rs7927692
Chromosome Location	chr11:58272137-58272138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10400284	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295700	1.00[AMR][1000 genomes]
rs6591481	1.00[AMR][1000 genomes]
rs6591482	1.00[AMR][1000 genomes]
rs7108127	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112211	1.00[AMR][1000 genomes]
rs7113847	1.00[AMR][1000 genomes]
rs7119625	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123874	1.00[AMR][1000 genomes]
rs7124590	1.00[AMR][1000 genomes]
rs7124621	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7126120	1.00[AMR][1000 genomes]
rs7127636	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928361	1.00[AMR][1000 genomes]
rs7930769	1.00[AMR][1000 genomes]
rs7931125	1.00[AMR][1000 genomes]
rs7944349	1.00[AMR][1000 genomes]
rs7944661	1.00[AMR][1000 genomes]
rs7945130	1.00[AMR][1000 genomes]
rs7945334	1.00[AMR][1000 genomes]
rs9667413	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:58266800-58274800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:58266800-58278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:58266800-58278800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:58267000-58279600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:58269400-58277200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:58271000-58276400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:58271400-58273600	Weak transcription	Primary B cells from cord blood	blood
9	chr11:58272000-58273400	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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