Variant report
| Variant | rs7125019 |
|---|---|
| Chromosome Location | chr11:58251994-58251995 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:58244849..58247132-chr11:58250065..58252889,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10400284 | 1.00[AMR][1000 genomes] |
| rs12295700 | 1.00[AMR][1000 genomes] |
| rs6591481 | 1.00[AMR][1000 genomes] |
| rs6591482 | 1.00[AMR][1000 genomes] |
| rs7108127 | 1.00[AMR][1000 genomes] |
| rs7112211 | 1.00[AMR][1000 genomes] |
| rs7113847 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7119625 | 1.00[AMR][1000 genomes] |
| rs7123874 | 1.00[AMR][1000 genomes] |
| rs7124590 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7124621 | 1.00[AMR][1000 genomes] |
| rs7126120 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7127636 | 1.00[AMR][1000 genomes] |
| rs7927692 | 1.00[AMR][1000 genomes] |
| rs7928361 | 1.00[AMR][1000 genomes] |
| rs7930769 | 1.00[AMR][1000 genomes] |
| rs7931125 | 1.00[AMR][1000 genomes] |
| rs7944349 | 1.00[AMR][1000 genomes] |
| rs7944661 | 1.00[AMR][1000 genomes] |
| rs7945130 | 1.00[AMR][1000 genomes] |
| rs7945334 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9667413 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042491 | chr11:58134936-58263639 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv976518 | chr11:58247628-58271109 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58251600-58252400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
