Variant report

Variant	rs7124621
Chromosome Location	chr11:58261143-58261144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10400284	1.00[AMR][1000 genomes]
rs12295700	1.00[AMR][1000 genomes]
rs6591481	1.00[AMR][1000 genomes]
rs6591482	1.00[AMR][1000 genomes]
rs7108127	1.00[AMR][1000 genomes]
rs7112211	1.00[AMR][1000 genomes]
rs7113847	1.00[AMR][1000 genomes]
rs7119625	1.00[AMR][1000 genomes]
rs7123874	1.00[AMR][1000 genomes]
rs7124590	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7126120	1.00[AMR][1000 genomes]
rs7127636	1.00[AMR][1000 genomes]
rs7927692	1.00[AMR][1000 genomes]
rs7928361	1.00[AMR][1000 genomes]
rs7930769	1.00[AMR][1000 genomes]
rs7931125	1.00[AMR][1000 genomes]
rs7944349	1.00[AMR][1000 genomes]
rs7944661	1.00[AMR][1000 genomes]
rs7945130	1.00[AMR][1000 genomes]
rs7945334	1.00[AMR][1000 genomes]
rs9667413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58252400-58265200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58260400-58262000	Weak transcription	Aorta	Aorta
3	chr11:58261000-58261400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:58261000-58261400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:58261000-58261400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:58261000-58261400	Enhancers	NHEK	skin
7	chr11:58261000-58262200	Enhancers	HSMM	muscle
8	chr11:58261000-58262400	Enhancers	NHLF	lung
9	chr11:58261000-58262600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:58261000-58262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:58261000-58263800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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