Variant report

Variant	rs7112211
Chromosome Location	chr11:58440820-58440821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10400284	1.00[AMR][1000 genomes]
rs6591481	1.00[AMR][1000 genomes]
rs6591482	1.00[AMR][1000 genomes]
rs7108127	1.00[AMR][1000 genomes]
rs7113847	1.00[AMR][1000 genomes]
rs7119625	1.00[AMR][1000 genomes]
rs7123874	1.00[AMR][1000 genomes]
rs7124590	1.00[AMR][1000 genomes]
rs7124621	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7126120	1.00[AMR][1000 genomes]
rs7127636	1.00[AMR][1000 genomes]
rs7927692	1.00[AMR][1000 genomes]
rs7928361	1.00[AMR][1000 genomes]
rs7931125	1.00[AMR][1000 genomes]
rs7944349	1.00[AMR][1000 genomes]
rs7944661	1.00[AMR][1000 genomes]
rs7945130	1.00[AMR][1000 genomes]
rs7945334	1.00[AMR][1000 genomes]
rs9667413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58440000-58441600	Weak transcription	Stomach Mucosa	stomach
2	chr11:58440800-58441000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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