Variant report

Variant	rs7108127
Chromosome Location	chr11:58316834-58316835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400284	1.00[AMR][1000 genomes]
rs12295700	1.00[AMR][1000 genomes]
rs6591481	1.00[AMR][1000 genomes]
rs6591482	1.00[AMR][1000 genomes]
rs7112211	1.00[AMR][1000 genomes]
rs7113847	1.00[AMR][1000 genomes]
rs7119594	0.90[AFR][1000 genomes]
rs7119625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7124590	1.00[AMR][1000 genomes]
rs7124621	1.00[AMR][1000 genomes]
rs7125019	1.00[AMR][1000 genomes]
rs7126120	1.00[AMR][1000 genomes]
rs7127636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928361	1.00[AMR][1000 genomes]
rs7930769	1.00[AMR][1000 genomes]
rs7931125	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7944349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7944661	1.00[AMR][1000 genomes]
rs7945130	1.00[AMR][1000 genomes]
rs7945334	1.00[AMR][1000 genomes]
rs9667413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
6	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
9	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
11	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
12	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
13	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
14	chr11:58299800-58317200	Weak transcription	NHLF	lung
15	chr11:58299800-58320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:58300000-58317200	Weak transcription	Esophagus	oesophagus
17	chr11:58300000-58317200	Weak transcription	Gastric	stomach
18	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:58300400-58317200	Weak transcription	Colonic Mucosa	Colon
20	chr11:58300400-58317200	Weak transcription	Pancreas	Pancrea
21	chr11:58300600-58317200	Weak transcription	Spleen	Spleen
22	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:58306000-58322400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr11:58308200-58324000	Weak transcription	NH-A	brain
25	chr11:58309000-58336200	Weak transcription	NHEK	skin
26	chr11:58309400-58323400	Weak transcription	HUVEC	blood vessel
27	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:58309800-58317800	Weak transcription	Fetal Brain Male	brain
29	chr11:58309800-58322600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:58310000-58330000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:58310200-58322400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:58310200-58322400	Strong transcription	Liver	Liver
33	chr11:58310200-58322600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:58310200-58322800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:58310400-58322400	Strong transcription	Adipose Nuclei	Adipose
36	chr11:58310400-58322400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:58310400-58322600	Strong transcription	Primary B cells from cord blood	blood
38	chr11:58310400-58322600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:58310400-58322600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:58310400-58322600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:58310400-58322600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:58310400-58322800	Strong transcription	Fetal Thymus	thymus
43	chr11:58310400-58322800	Strong transcription	GM12878-XiMat	blood
44	chr11:58310600-58322400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:58310600-58322400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:58310600-58322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:58310600-58331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:58311400-58320200	Strong transcription	Colon Smooth Muscle	Colon
49	chr11:58311600-58319000	Strong transcription	HSMM	muscle
50	chr11:58311600-58322400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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