Variant report

Variant	rs7986337
Chromosome Location	chr13:50483928-50483929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr13:50483909-50484339	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr13:50483626-50484556	MCF10A-Er-Src	breast:	n/a	chr13:50484076-50484087
3	POLR2A	chr13:50483816-50484004	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr13:50483690-50484373	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr13:50483780-50484249	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr13:50483638-50484313	MCF10A-Er-Src	breast:	n/a	chr13:50484076-50484087
7	STAT3	chr13:50483592-50484309	MCF10A-Er-Src	breast:	n/a	chr13:50484076-50484087
8	FOS	chr13:50483643-50484373	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr13:50483660-50484321	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr13:50483627-50484399	MCF10A-Er-Src	breast:	n/a	chr13:50484076-50484087

Variant related genes	Relation type
RNY4P9	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11617754	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1609571	0.81[CHB][hapmap]
rs2066549	0.82[CHB][hapmap]
rs2066557	0.82[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap]
rs2066575	0.82[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs2066585	0.82[CHB][hapmap]
rs2242482	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs2472599	0.92[ASN][1000 genomes]
rs2475837	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740524	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2740544	0.83[CHD][hapmap]
rs2740545	0.82[CHB][hapmap]
rs2760914	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs2803839	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs28798976	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3116591	0.83[ASN][1000 genomes]
rs4548769	0.82[CHB][hapmap]
rs4942899	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs7338055	0.81[ASN][1000 genomes]
rs73489861	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73489862	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790943	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9535407	0.82[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs9568348	0.86[CHB][hapmap]
rs9568354	0.85[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9568357	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568366	0.94[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9596219	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs9596220	0.82[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
9	chr13:50479600-50508600	Weak transcription	K562	blood
10	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
11	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
12	chr13:50481400-50486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:50481400-50489600	Weak transcription	Fetal Intestine Large	intestine
14	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
15	chr13:50482000-50488000	Weak transcription	A549	lung
16	chr13:50482200-50486000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:50482200-50486000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:50482200-50486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:50482200-50486200	Weak transcription	Osteobl	bone
20	chr13:50482200-50488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:50482200-50490400	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:50482400-50486000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:50482400-50486000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:50482400-50488000	Weak transcription	HMEC	breast
25	chr13:50482400-50489600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:50482600-50486000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:50482600-50488000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:50482600-50490200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:50482600-50490400	Weak transcription	NHLF	lung
30	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
31	chr13:50482800-50485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:50482800-50488000	Weak transcription	Placenta	Placenta
33	chr13:50483000-50492200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:50483600-50486000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:50483600-50486000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr13:50483800-50490200	Weak transcription	Primary monocytes fromperipheralblood	blood

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