Variant report

Variant rs9596220
Chromosome Location chr13:50570191-50570192
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:50543600-50570400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr13:50551000-50570200 Weak transcription Placenta Amnion Placenta Amnion
3 chr13:50551400-50570200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr13:50552400-50570200 Weak transcription Lung lung
5 chr13:50552800-50570200 Weak transcription Spleen Spleen
6 chr13:50556800-50570200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr13:50567600-50570400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr13:50569400-50570200 Active TSS Primary T regulatory cells fromperipheralblood blood
9 chr13:50569400-50570200 Flanking Active TSS GM12878-XiMat blood
10 chr13:50569400-50570600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr13:50569400-50570800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr13:50569600-50570200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
13 chr13:50569600-50570200 Flanking Bivalent TSS/Enh HUES64 Cell Line embryonic stem cell
14 chr13:50569600-50570200 Flanking Bivalent TSS/Enh iPS-20b Cell Line embryonic stem cell
15 chr13:50569600-50570200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
16 chr13:50569600-50570400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
17 chr13:50569600-50570400 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
18 chr13:50569600-50570400 Flanking Active TSS Stomach Smooth Muscle stomach
19 chr13:50569600-50570600 Flanking Active TSS Primary B cells from cord blood blood
20 chr13:50569600-50570600 Flanking Active TSS Primary hematopoietic stem cells blood
21 chr13:50569600-50572200 Active TSS Brain Hippocampus Middle brain
22 chr13:50569800-50570200 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
23 chr13:50569800-50570200 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
24 chr13:50569800-50570200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr13:50569800-50570200 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
26 chr13:50569800-50570200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr13:50569800-50570200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr13:50569800-50570200 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
29 chr13:50569800-50570200 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr13:50569800-50570200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
31 chr13:50569800-50570200 Flanking Active TSS Brain Substantia Nigra brain
32 chr13:50569800-50570200 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
33 chr13:50569800-50570200 Flanking Active TSS Fetal Kidney kidney
34 chr13:50569800-50570200 Flanking Active TSS Fetal Lung lung
35 chr13:50569800-50570200 Flanking Active TSS Fetal Muscle Leg muscle
36 chr13:50569800-50570200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
37 chr13:50569800-50570400 Flanking Active TSS Primary monocytes fromperipheralblood blood
38 chr13:50569800-50570400 Flanking Active TSS Primary B cells from peripheral blood blood
39 chr13:50569800-50570400 Flanking Active TSS Primary T cells from cord blood blood
40 chr13:50569800-50570400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
41 chr13:50569800-50570400 Flanking Active TSS Adipose Nuclei Adipose
42 chr13:50569800-50570400 Flanking Active TSS Rectal Mucosa Donor 29 rectum
43 chr13:50569800-50570400 Flanking Active TSS Thymus Thymus
44 chr13:50569800-50570400 Flanking Active TSS HUVEC blood vessel
45 chr13:50569800-50571800 Active TSS Duodenum Mucosa Duodenum
46 chr13:50569800-50571800 Active TSS Duodenum Smooth Muscle Duodenum
47 chr13:50569800-50571800 Active TSS Rectal Smooth Muscle rectum
48 chr13:50569800-50571800 Active TSS Skeletal Muscle Male skeletal muscle
49 chr13:50569800-50572000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr13:50569800-50572000 Active TSS Brain Angular Gyrus brain

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