Variant report

Variant	rs7336058
Chromosome Location	chr13:50469869-50469870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11616903	0.84[CEU][hapmap]
rs11617754	0.86[CHB][hapmap]
rs2066549	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2066557	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap]
rs2066575	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap]
rs2242482	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap]
rs2740524	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2740544	0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap]
rs2740545	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2760914	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2803839	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2997624	0.80[ASN][1000 genomes]
rs4548769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4942899	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4942901	0.90[ASN][1000 genomes]
rs7338055	0.93[ASN][1000 genomes]
rs790943	0.86[CHB][hapmap]
rs7986337	0.82[CHB][hapmap]
rs9526608	0.80[CEU][hapmap]
rs9535372	0.80[CEU][hapmap]
rs9535407	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9568354	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9568357	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs9568363	0.91[ASN][1000 genomes]
rs9568364	0.91[ASN][1000 genomes]
rs9568366	0.90[CHB][hapmap]
rs9596215	0.90[ASN][1000 genomes]
rs9596219	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9596220	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436655	chr13:50462077-50472044	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7336058	LOC220429	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50469000-50470000	Weak transcription	HepG2	liver
3	chr13:50469600-50470400	Enhancers	Placenta	Placenta

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