Variant report

Variant	rs9568357
Chromosome Location	chr13:50495555-50495556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50494914..50497363-chr13:50507125..50509301,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11617754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066549	0.86[CHB][hapmap]
rs2066557	0.86[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap]
rs2066571	0.81[ASN][1000 genomes]
rs2066575	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs2066585	0.86[CHB][hapmap]
rs2242482	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs2472599	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2475837	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2740524	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2740544	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs2740545	0.86[CHB][hapmap]
rs2760914	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs2803839	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs28798976	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3116591	0.85[ASN][1000 genomes]
rs4548769	0.86[CHB][hapmap]
rs4942899	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[ASN][1000 genomes]
rs7338055	0.82[ASN][1000 genomes]
rs73489861	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73489862	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs790943	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs7986337	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9535407	0.86[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9562941	0.82[CHB][hapmap]
rs9568348	0.81[CHB][hapmap]
rs9568354	0.81[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs9568359	0.81[CHB][hapmap]
rs9568363	0.80[ASN][1000 genomes]
rs9568364	0.80[ASN][1000 genomes]
rs9568366	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[ASN][1000 genomes]
rs9596219	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs9596220	0.86[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
2	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:50479600-50508600	Weak transcription	K562	blood
4	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
5	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
6	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
7	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
8	chr13:50484000-50509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:50484400-50501800	Weak transcription	HSMMtube	muscle
10	chr13:50484400-50509400	Weak transcription	Fetal Kidney	kidney
11	chr13:50484600-50509600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:50485000-50499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:50485800-50501800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:50485800-50506200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:50485800-50509200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr13:50486000-50496200	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr13:50486000-50503400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:50486000-50503400	Strong transcription	Liver	Liver
19	chr13:50486000-50509400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:50486400-50509600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:50486600-50508800	Weak transcription	Hela-S3	cervix
22	chr13:50487400-50509400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr13:50487600-50509400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr13:50487800-50496800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:50488000-50500400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr13:50488400-50509600	Weak transcription	Colonic Mucosa	Colon
27	chr13:50488800-50497800	Weak transcription	A549	lung
28	chr13:50489200-50509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:50489200-50510000	Weak transcription	Spleen	Spleen
30	chr13:50489600-50496000	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr13:50489600-50501000	Strong transcription	Osteobl	bone
32	chr13:50489600-50502400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:50489600-50503200	Strong transcription	Adipose Nuclei	Adipose
34	chr13:50489600-50504200	Strong transcription	Fetal Intestine Large	intestine
35	chr13:50490000-50495800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr13:50490000-50496000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:50490000-50499400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr13:50490000-50501400	Weak transcription	Fetal Thymus	thymus
39	chr13:50490200-50495600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:50490200-50495800	Strong transcription	Left Ventricle	heart
41	chr13:50490200-50495800	Strong transcription	NH-A	brain
42	chr13:50490200-50496000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:50490200-50502800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr13:50490200-50503000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr13:50490400-50495800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:50490400-50495800	Strong transcription	Fetal Muscle Leg	muscle
47	chr13:50490400-50496200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr13:50490400-50496400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr13:50490600-50499600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:50490800-50497600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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