Variant report

Variant	rs9568359
Chromosome Location	chr13:50506233-50506234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50503635..50507616-chr13:50508303..50511854,6	K562	blood:
2	chr13:50503267..50506681-chr13:50507802..50511782,3	K562	blood:
3	chr13:50505920..50507836-chr13:50548605..50550830,2	K562	blood:

Variant related genes	Relation type
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11617754	0.82[CHB][hapmap]
rs12429041	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12429047	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12430021	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12430731	0.86[ASN][1000 genomes]
rs12584761	0.89[EUR][1000 genomes]
rs12585937	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1609571	0.85[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17073758	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2407879	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2897794	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142286	0.91[EUR][1000 genomes]
rs4942896	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4942898	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942903	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs790943	0.82[CHB][hapmap]
rs7983585	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562938	0.85[ASN][1000 genomes]
rs9562939	0.83[ASN][1000 genomes]
rs9562940	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9562941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9562944	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9562951	0.93[EUR][1000 genomes]
rs9568348	0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568351	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568353	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568357	0.81[CHB][hapmap]
rs9568361	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568365	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568366	0.81[CHB][hapmap]
rs9568371	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568379	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv976235	chr13:50501048-50509556	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50479600-50508600	Weak transcription	K562	blood
2	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
3	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
4	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
5	chr13:50484000-50509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:50484400-50509400	Weak transcription	Fetal Kidney	kidney
7	chr13:50484600-50509600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr13:50485800-50509200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr13:50486000-50509400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:50486400-50509600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr13:50486600-50508800	Weak transcription	Hela-S3	cervix
12	chr13:50487400-50509400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:50487600-50509400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr13:50488400-50509600	Weak transcription	Colonic Mucosa	Colon
15	chr13:50489200-50509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr13:50489200-50510000	Weak transcription	Spleen	Spleen
17	chr13:50491200-50507000	Weak transcription	Brain Angular Gyrus	brain
18	chr13:50492200-50509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr13:50492400-50509600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr13:50492600-50508800	Weak transcription	HUVEC	blood vessel
21	chr13:50492800-50509400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:50492800-50509600	Weak transcription	Aorta	Aorta
23	chr13:50493400-50509400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:50493800-50509600	Weak transcription	Lung	lung
25	chr13:50494200-50508800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:50494400-50508800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:50495400-50509600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:50495800-50508400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr13:50495800-50508800	Weak transcription	Brain Substantia Nigra	brain
30	chr13:50495800-50508800	Weak transcription	Fetal Brain Female	brain
31	chr13:50495800-50508800	Weak transcription	HepG2	liver
32	chr13:50496000-50506600	Weak transcription	NHLF	lung
33	chr13:50496000-50507000	Weak transcription	Psoas Muscle	Psoas
34	chr13:50497400-50509400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr13:50499000-50508800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr13:50499000-50509400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr13:50499400-50506800	Weak transcription	Brain Germinal Matrix	brain
38	chr13:50499600-50509600	Weak transcription	Esophagus	oesophagus
39	chr13:50500000-50509400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr13:50500000-50509800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:50500400-50508800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr13:50500400-50508800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr13:50500400-50508800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr13:50500400-50508800	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:50500600-50509200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr13:50500800-50508800	Weak transcription	GM12878-XiMat	blood
47	chr13:50501000-50507200	Weak transcription	A549	lung
48	chr13:50501200-50508800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:50502000-50508200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr13:50502000-50508800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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