Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50472956..50475084-chr13:50475360..50476987,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12429041	0.83[ASN][1000 genomes]
rs12429047	0.84[ASN][1000 genomes]
rs12585937	0.82[ASN][1000 genomes]
rs1609571	0.82[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2066549	0.81[CHB][hapmap]
rs2066557	0.81[CHB][hapmap]
rs2066575	0.81[CHB][hapmap]
rs2066585	0.81[CHB][hapmap]
rs2242482	0.81[CHB][hapmap]
rs2407879	0.86[ASN][1000 genomes]
rs2740524	0.81[CHB][hapmap]
rs2740545	0.81[CHB][hapmap]
rs2760914	0.81[CHB][hapmap]
rs2803839	0.81[CHB][hapmap]
rs2897794	0.83[ASN][1000 genomes]
rs4548769	0.81[CHB][hapmap]
rs4942896	0.81[ASN][1000 genomes]
rs4942898	0.85[ASN][1000 genomes]
rs4942899	0.81[CHB][hapmap]
rs9535407	0.81[CHB][hapmap]
rs9562938	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9562940	0.83[ASN][1000 genomes]
rs9562941	0.82[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9568348	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs9568353	0.84[ASN][1000 genomes]
rs9568359	0.82[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9596219	0.81[CHB][hapmap]
rs9596220	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50473000-50476600	Weak transcription	HepG2	liver

Quick Search: